Software and data

Software

  • ProPCA: Scalable Probabilistic PCA for genotype data

  • RHE-reg: Heritability estimation on biobank-scale data using randomized Method of Moments (Wu and Sankararaman, Bioinformatics 2018).

  • ArchIE: Reference-free archaic local ancestry inference (Durvasula and Sankararaman).

  • ANCESTOR: Inferring the ancestries of each parent of an admixed individual using a pooled semi-Markov process (Zou et al., Bioinformatics 2015).

  • ED: Estimating dates of ancient admixture using linkage disequilibrium (Sankararaman et al., PLoS Genetics 2012).

  • LAMP-LD: Estimating local ancestry by leveraging linkage disequilibrium (Baran, Pasaniuc, Sankararaman, et al., Bioinformatics 2012).

  • SecureGenome: Finding a set of secure SNPs in a study (Sankararaman, Obozinski, et al., Nature Genetics 2009).

  • LAMP: Estimating local ancestry in admixed populations (Sankararaman et al., American Journal of Human Genetics 2008).

Data