Software

  1. R-GENSENG: A randomized approach to speed up the analysis of large scale read-count data in the application of CNV detection
  2. Gracob: a novel graph-based constant-column biclustering method for mining growth phenotype data
  3. Fleximer: Accurate Quantification of RNA-Seq via Variable-Length k-mers
  4. PseudoLasso: Efficient approach to correct read alignment for pseudogene abundance estimates
  5. Source-LDA: Enhancing probabilistic topic models using prior knowledge sources
  6. Ranking Causal Anomalies via Temporal and Dynamical Analysis on Vanishing Correlations
  7. Spotlite: Web Application and Augmented Algorithms for Predicting Co-Complexed Proteins from Affinity Purification - Mass Spectrometry Data
  8. HICC: An Entropy Splitting Based Framework for Hierarchical Co-Clustering
  9. RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
  10. Graph Regularized Dual Lasso for Robust eQTL Mapping
  11. Flexible and Robust Co-Regularized Multi-Domain Graph Clustering
  12. GAIN: Efficient genome ancestry inference in complex pedigrees with inbreeding
  13. Multi-Alignment and Read Annotation Pipeline: Lapels, Suspenders
  14. ASGENSENG: A software to detect allele specific CNV from both WGS and WES data
  15. GENSENG: Improving detection of copy number variation by simultaneous bias correction and read-depth segmentation
  16. MaCH-Admix: genotype imputation for admixed populations
  17. GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference due to RNAseq reads misalignment
  18. HTreeQA: using semi-perfect phylogeny trees in quantitative trait loci study on genotype data
  19. LTS: Discriminative subgraph mining by learning from search history
  20. GAIA: Graph classification using evolutionary computation
  21. REM: Rapid and Robust Resampling-Based Multiple-Testing Correction with Application in a Genome-Wide Expression Quantitative Trait Loci Study
  22. FastANOVA: an Efficient Algorithm for Genome-Wide Association Study
  23. Inferring Genome-wide Mosaic Structure
  24. Genotype Sequence Segmentation
  25. TreeQA: Tree-based Genome-wide Association Mapping
  26. NPUTE: Fast Algorithm for Imputing Missing Genotypes in SNPs
  27. FFSM: Fast Frequent Subgraph Mining