Software

  1. Gracob: a novel graph-based constant-column biclustering method for mining growth phenotype data
  2. Efficient approach to correct read alignment for pseudogene abundance estimates
  3. Source-LDA: Enhancing probabilistic topic models using prior knowledge sources
  4. Ranking Causal Anomalies via Temporal and Dynamical Analysis on Vanishing Correlations
  5. Spotlite: Web Application and Augmented Algorithms for Predicting Co-Complexed Proteins from Affinity Purification - Mass Spectrometry Data
  6. HICC: An Entropy Splitting Based Framework for Hierarchical Co-Clustering
  7. RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
  8. Graph Regularized Dual Lasso for Robust eQTL Mapping
  9. Flexible and Robust Co-Regularized Multi-Domain Graph Clustering
  10. GAIN: Efficient genome ancestry inference in complex pedigrees with inbreeding
  11. Multi-Alignment and Read Annotation Pipeline: Lapels, Suspenders
  12. ASGENSENG: A software to detect allele specific CNV from both WGS and WES data
  13. GENSENG: Improving detection of copy number variation by simultaneous bias correction and read-depth segmentation
  14. MaCH-Admix: genotype imputation for admixed populations
  15. GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference due to RNAseq reads misalignment
  16. HTreeQA: using semi-perfect phylogeny trees in quantitative trait loci study on genotype data
  17. LTS: Discriminative subgraph mining by learning from search history
  18. GAIA: Graph classification using evolutionary computation
  19. REM: Rapid and Robust Resampling-Based Multiple-Testing Correction with Application in a Genome-Wide Expression Quantitative Trait Loci Study
  20. FastANOVA: an Efficient Algorithm for Genome-Wide Association Study
  21. Inferring Genome-wide Mosaic Structure
  22. Genotype Sequence Segmentation
  23. TreeQA: Tree-based Genome-wide Association Mapping
  24. NPUTE: Fast Algorithm for Imputing Missing Genotypes in SNPs
  25. FFSM: Fast Frequent Subgraph Mining