Software

  1. Spotlite: Web Application and Augmented Algorithms for Predicting Co-Complexed Proteins from Affinity Purification - Mass Spectrometry Data
  2. RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
  3. GAIN: Efficient genome ancestry inference in complex pedigrees with inbreeding
  4. Multi-Alignment and Read Annotation Pipeline: Lapels, Suspenders
  5. ASGENSENG: A software to detect allele specific CNV from both WGS and WES data
  6. GENSENG: Improving detection of copy number variation by simultaneous bias correction and read-depth segmentation
  7. MaCH-Admix: genotype imputation for admixed populations
  8. GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference due to RNAseq reads misalignment
  9. HTreeQA: using semi-perfect phylogeny trees in quantitative trait loci study on genotype data
  10. LTS: Discriminative subgraph mining by learning from search history
  11. GAIA: Graph classification using evolutionary computation
  12. REM: Rapid and Robust Resampling-Based Multiple-Testing Correction with Application in a Genome-Wide Expression Quantitative Trait Loci Study
  13. FastANOVA: an Efficient Algorithm for Genome-Wide Association Study
  14. Inferring Genome-wide Mosaic Structure
  15. Genotype Sequence Segmentation
  16. TreeQA: Tree-based Genome-wide Association Mapping
  17. NPUTE: Fast Algorithm for Imputing Missing Genotypes in SNPs
  18. FFSM: Fast Frequent Subgraph Mining