Software

  1. Ranking Causal Anomalies via Temporal and Dynamical Analysis on Vanishing Correlations
  2. Spotlite: Web Application and Augmented Algorithms for Predicting Co-Complexed Proteins from Affinity Purification - Mass Spectrometry Data
  3. HICC: An Entropy Splitting Based Framework for Hierarchical Co-Clustering
  4. RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
  5. Graph Regularized Dual Lasso for Robust eQTL Mapping
  6. Flexible and Robust Co-Regularized Multi-Domain Graph Clustering
  7. GAIN: Efficient genome ancestry inference in complex pedigrees with inbreeding
  8. Multi-Alignment and Read Annotation Pipeline: Lapels, Suspenders
  9. ASGENSENG: A software to detect allele specific CNV from both WGS and WES data
  10. GENSENG: Improving detection of copy number variation by simultaneous bias correction and read-depth segmentation
  11. MaCH-Admix: genotype imputation for admixed populations
  12. GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference due to RNAseq reads misalignment
  13. HTreeQA: using semi-perfect phylogeny trees in quantitative trait loci study on genotype data
  14. LTS: Discriminative subgraph mining by learning from search history
  15. GAIA: Graph classification using evolutionary computation
  16. REM: Rapid and Robust Resampling-Based Multiple-Testing Correction with Application in a Genome-Wide Expression Quantitative Trait Loci Study
  17. FastANOVA: an Efficient Algorithm for Genome-Wide Association Study
  18. Inferring Genome-wide Mosaic Structure
  19. Genotype Sequence Segmentation
  20. TreeQA: Tree-based Genome-wide Association Mapping
  21. NPUTE: Fast Algorithm for Imputing Missing Genotypes in SNPs
  22. FFSM: Fast Frequent Subgraph Mining