SCOPE: Biobank-scale population structure inference (Chiu, et al., American Journal of Human Genetics 2022)
SCORE: Biobank-scale genetic correlation estimator (Wu, et al., American Journal of Human Genetics 2021)
OrientAGraph: Estimation of admixture graphs (Molloy, et al., Bioinformatics 2021)
RHE-mc: Efficient variance components analysis (Pazokitoroudi, et al., Nature Communications 2020)
ProPCA: Scalable Probabilistic PCA for genotype data (Agrawal, Chiu, et al. PLoS Genetics 2020)
ArchIE: Reference-free archaic local ancestry inference (Durvasula and Sankararaman)
ANCESTOR: Inferring the ancestries of each parent of an admixed individual using a pooled semi-Markov process (Zou et al., Bioinformatics 2015)
CRF: Caller for inferring Neanderthal ancestry (Sankararaman et al., Nature 2014)
ED: Estimating dates of ancient admixture using linkage disequilibrium (Sankararaman et al., PLoS Genetics 2012)
LAMP-LD: Estimating local ancestry by leveraging linkage disequilibrium (Baran, Pasaniuc, Sankararaman, et al., Bioinformatics 2012)
SecureGenome: Finding a set of secure SNPs in a study (Sankararaman, Obozinski, et al., Nature Genetics 2009)
LAMP: Estimating local ancestry in admixed populations (Sankararaman et al., American Journal of Human Genetics 2008)